PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.006G197200.1
Common NameB456_006G197200, LOC105800111
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family ERF
Protein Properties Length: 217aa    MW: 23411.1 Da    PI: 4.3121
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.006G197200.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP250.64.8e-164695155
                 AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                        s y+G+r  +++g+Wv+eIr+p++   ++r++lg++ t+e+Aa a++ a+ +l+g
  Gorai.006G197200.1 46 SSYRGIR--SRSGKWVSEIREPRK---TTRIWLGTYPTPEMAATAYDVAAIALKG 95
                        679***6..678*********843...5***********************9998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000183.33E-2846104No hitNo description
SuperFamilySSF541711.18E-1746104IPR016177DNA-binding domain
SMARTSM003802.1E-2847111IPR001471AP2/ERF domain
PfamPF008472.2E-94795IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.5E-2647104IPR001471AP2/ERF domain
PROSITE profilePS5103219.86247103IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 217 aa     Download sequence    Send to blast
MANLSPEENP PAPQIPDSTL DLVQLPNHSN LPSIPTPNPV QYRRHSSYRG IRSRSGKWVS  60
EIREPRKTTR IWLGTYPTPE MAATAYDVAA IALKGPDTDL NFPDMILSYP KVASTSAADI  120
RAAAASAAAS RLPMPDTGSS KQDQGNLQNE GTASTFSTCM ESGSGQEYID EEELLNFPNL  180
MVDMAGGMLV TPPRINSLAS DDSPEISDIE SLWTYP*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ2243830.0DQ224383.1 Gossypium hirsutum DRE-binding protein 3b (DBP3b) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012486488.11e-158PREDICTED: ethylene-responsive transcription factor ERF027-like
SwissprotQ9FJ901e-48ERF25_ARATH; Ethylene-responsive transcription factor ERF025
TrEMBLA0A0D2NVF91e-158A0A0D2NVF9_G
STRINGVIT_16s0100g00400.t013e-64(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM19572777
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52020.16e-36ERF family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]